open science

Open data and protocol sharing

In our opinion, good science isn’t done in a vacuum. Sharing information among our peers is critical for responding to a public health crisis and understanding the mechanisms driving emerging diseases. We’ll release our virus genetic data and any useful protocols or analysis tools as soon as they are generated. Please note that because these are usually early releases (pre-publication), they may contain mistakes. We’ll make more protocols, analysis tools, and data available soon. If you have any questions, or if you find a mistake, feel free to email us at [email protected].

COVID Tracker CT

Genomic, wastewater, and diagnostic surveillance initiates and protocols.


Nextstrain repositories

Visualization of virus emergence and evolution using an online tool.


WestNile 4K Project

Collaborators, background, data, and project updates.


Amplicon-based virus sequencing

MiSeq & MinION protocols, primer schemes, and design tools.


Github repository

Data and code to reproduce our work; lectures and tutorials to learn how to do it.