GOOD SCIENCE DOESN’T HAPPEN IN A VACUUM.
Research efforts are hindered when techniques, data, and knowledge are not made available to everyone who wants to utilize them. Please explore the resources on this page to see if our tools would be helpful in your work.
GITHUB
Data processing pipelines and bioinformatics
Visit our GitPROTOCOLS.IO
Laboratory methods and workflows
Review protocols
PRIMAL SCHEME
Primer schemes for targeted amplicon sequencing
Browse primer sets
DENGUE LINEAGES
This system is built off experience developing lineage systems for other viruses of public health importance, and is the result of a global collaboration of researchers and public health professionals.
It aims to provide additional spatial and temporal resolution with which to discuss the large genetic diversity of dengue virus. Specifically, it splits up existing genotypes into smaller groups and provides a standardized, neutral naming system.
NEXTSTRAIN: Rapid data analysis and sharing
Nextstrain is an open-source project harnessing the scientific and public health potential of pathogen genome data. By integrating sequencing data, lineage assignments, and collection metadata, the tool allows the user to create informative, interactive maps of their subject of choice. We often visualize data for our projects in Nextstrain; the resulting figures are helpful for looking at data and including in presentations and papers.
Please note that these pages may represent research in-progress or projects that are not being actively updated.
